DisGeNET - a database of gene-disease associations

List of shared variants

Neoplasms, C0027651

Disease: Malignant neoplasm of stomach

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1057519848	EGFR	0.570	0.560	7	55191822	missense variant	TG/GT	mnv			72
rs2279744	MDM2	0.605	0.640	12	68808800	intron variant	T/G	snv		0.31	48
rs2675	ITGB5	0.882	0.120	3	124763266	3 prime UTR variant	T/G	snv		0.17	4
rs353639	CD44 ; SNORD164	0.851	0.120	11	35162817	intron variant	T/G	snv		0.32	5
rs397507444	MTHFR	0.405	0.880	1	11794407	missense variant	T/G	snv			306
rs1760944	OSGEP ; APEX1	0.672	0.480	14	20454990	non coding transcript exon variant	T/C;G	snv			26
rs1047768	ERCC5 ; BIVM-ERCC5	0.695	0.320	13	102852167	synonymous variant	T/C	snv	0.52	0.59	20
rs1047972	AURKA	0.716	0.240	20	56386407	missense variant	T/C	snv	0.85	0.84	19
rs1051740	EPHX1	0.592	0.760	1	225831932	missense variant	T/C	snv	0.32	0.27	56
rs1342387	ADIPOR1	0.776	0.120	1	202945228	intron variant	T/C	snv		0.53	12
rs1799964	LTA ; LOC100287329 ; TNF	0.608	0.760	6	31574531	upstream gene variant	T/C	snv		0.19	47
rs1800896	IL19 ; IL10	0.507	0.800	1	206773552	intron variant	T/C	snv		0.41	113
rs2172362	LOC105378667	0.925	0.080	1	39829228	intergenic variant	T/C	snv		0.58	3
rs25487	XRCC1	0.441	0.800	19	43551574	missense variant	T/C	snv	0.68	0.71	205
rs56250509	MLH1	0.790	0.160	3	37014530	missense variant	T/C	snv	2.0E-05		10
rs662	PON1	0.485	0.840	7	95308134	missense variant	T/C	snv	0.38	0.42	157
rs689466	PACERR ; PTGS2	0.637	0.640	1	186681619	upstream gene variant	T/C	snv		0.17	33
rs758272654	GNAS	0.611	0.680	20	58909201	synonymous variant	T/C	snv	4.0E-06	7.0E-06	50
rs759397296	CASP2	0.925	0.080	7	143294294	missense variant	T/C	snv	4.0E-06		3
rs763059810	CXCR4	0.623	0.600	2	136115750	missense variant	T/C	snv	4.0E-06		41
rs763780	IL17F	0.531	0.720	6	52236941	missense variant	T/C	snv	6.7E-02	6.6E-02	87
rs121434568	EGFR	0.568	0.560	7	55191822	missense variant	T/A;G	snv			73
rs13181	KLC3 ; ERCC2	0.487	0.760	19	45351661	stop gained	T/A;G	snv	4.0E-06; 0.32		134
rs1799983	NOS3	0.430	0.880	7	150999023	missense variant	T/A;G	snv	0.75		246
rs1048943	CYP1A1	0.533	0.720	15	74720644	missense variant	T/A;C;G	snv	0.11	5.9E-02	88